I-OnuI

Type

Wild-Type


Target Sequence

-11  -10  -9   -8   -7   -6   -5   -4   -3   -2   -1   1    2    3    4    5    6    7    8    9    10   11  
T T T C C A C T T A T T C A A C C T T T T A

FASTA Sequence



SRRESINPWILTGFADAEGSFLLRIRNNNKSSVGYSTELGFQITLHNKDKSILENIQSTWKVGVIANSGDNAVSL
KVTRFEDLKVIIDHFEKYPLITQKLGDYMLFKQAFCVMENKEHLKINGIKELVRIKAKLNWGLTDELKKAFPEII
SKERSLINKNIPNFKWLAGFTSGEGCFFVNLIKSKSKLGVQVQLVFSITQHIKDKNLMNSLITYLGCGYIKEKNK
SEFSWLDFVVTKFSDINDKIIPVFQENTLIGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGRVF

Crystal Structure

PDB File
PyMOL File

Position Weight Matrix

I-OnuI


posACGT
-11 0.80 0.90 1.00 1.00
-10 1.00 0.80 0.70 1.00
-9 0.90 0.50 0.65 1.00
-8 0.20 1.00 0.20 0.25
-7 0.12 1.00 0.12 0.25
-6 1.00 0.45 0.55 0.25
-5 0.10 1.00 0.15 0.10
-4 0.85 0.75 0.40 1.00
-3 0.40 0.55 1.00 1.00
-2 1.00 0.20 0.18 0.45
-1 0.20 0.18 0.10 1.00
1 0.25 0.15 0.08 1.00
2 0.10 1.00 0.15 0.30
3 1.00 0.80 0.75 0.55
4 0.90 0.80 0.50 1.00
5 0.45 1.00 0.20 0.85
6 0.80 1.00 0.65 0.65
7 0.00 0.70 0.65 1.00
8 0.65 0.40 0.40 1.00
9 0.65 0.50 0.30 1.00
10 0.70 0.60 1.00 0.90
11 1.00 0.90 0.65 0.85

PWM Additional Information

Author: Barry Stoddard

Notes:


Amino Acid Contact Modules

ModuleAmino Acid Contact Modules (?)
-11 → -9:Asn 32, Lys 34, Ser 35, Ser 36, Val 37, Gly 38, Ser 40
-8 → -6:Leu 26, Arg 28, Arg 30, Glu 42, Gly 44, Val 68, Ala 70, Lys 80, Thr 82
-6 → -4:Ser 24, Leu 26, Gln 46, Thr 48, Ala 70, Ser 72, Ser 78, Lys 80
-5 → -3:Ser 24, Gln 46, Thr 48, Ser 72, Asn 75, Ala 76, Ser 78, Lys 80
+3 → +5:Cys 180, Phe 182, Ser 201, Thr 203, Lys 227, Lys 229, Trp 234, Asp 236
+4 → +6:Phe 182, Asn 184, Val 199, Ser 201, Tyr 223, Lys 225, Lys 227, Val 238
+6 → +8:Asn 184, Ile 186, Gln 195, Gln 197, Val 199, Tyr 223, Thr 240
+9 → +11:Ile 186, Ser 188, Lys 189, Ser 190, Lys 191, Leu 192, Gly 193, Gln 195

Key
Experiment
Crystal Structure
Sequence Alignment
* Uncertain



Additional Information

Author: Barry Stoddard

Notes:


Date Added: 2012-01-30